PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L01158.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family bHLH
Protein Properties Length: 301aa    MW: 32957.2 Da    PI: 5.2462
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L01158.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH451.9e-144493255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      r +h+  E+rRR++iN++f+ Lrel+P+     ++K + a+ L ++++Y++ Lq
  Migut.L01158.1.p 44 RSKHSVTEQRRRSKINERFQILRELIPNV----DQKRDTASFLLEVIQYVQFLQ 93
                      899*************************7....79******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.3E-2240114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-1840114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.3174292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-124493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.49E-154497No hitNo description
SMARTSM003531.4E-114898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MKSGKSHNEE EEEEEEDFST RKDATSSANN SKDGKNSDRA NAIRSKHSVT EQRRRSKINE  60
RFQILRELIP NVDQKRDTAS FLLEVIQYVQ FLQEKVQKYE GSYQPWSSEP TKLMPWRNSH  120
WRVQGFGGQP QTVKNGAGPA SAFPVRFDEN NVSAVPATLQ RDPPIETDQV RDPNANDGAY  180
VHTLLQVPPP PSDAQSTEYP SGSDALSGPD ELAIEGGTIS ISSVYSQGLL NSLTQALEST  240
GVDLSQASIS VQINLGKRAN TGPTPGISID KDHGIPIPSG TFQNASNGEN LDQAQKRRKI  300
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Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847749.10.0PREDICTED: transcription factor BIM2
SwissprotQ9CAA41e-101BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0H3Y8Y91e-142A0A0H3Y8Y9_SALMI; Basic helix-loop-helix transcription factor
STRINGVIT_01s0010g00540.t011e-112(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.17e-99BES1-interacting Myc-like protein 2